Constants

Constants used throughout the whole package. These include letter codes and their respective names for all "good" and degenerate nucleotides/aminoacids.

NUCLEOTIDE_LETTER_CODES_GOOD

dict

key	value
nucleotide letter codes	names/description

NUCLEOTIDE_LETTER_CODES_DEGENERATE

dict

key	value
degenerate nucleotide letter codes	names/description

NUCLEOTIDE_LETTER_CODES_COMPLEMENT

dict

key	value
nucleotide letter codes	complement letter codes

AMINOACID_LETTER_CODES_GOOD

dict

key	value
aminoacid letter codes	names/description

AMINOACID_LETTER_CODES_DEGENERATE

dict

key	value
degenerate aminoacid letter codes	names/description

LETTER_CODES

dict

key	value
'nucleotide' / 'aminoacid'	respective (LETTER_CODES_GOOD, LETTER_CODES_DEGENERATE)

LETTER_CODES_ALL

set

All valid FASTA letter codes.

NUCLEOTIDE_LETTER_CODES_ALL

set

All valid FASTA nucleotide letter codes.

AMINOACID_LETTER_CODES_ALL

set

All valid FASTA aminoacid letter codes.

AMINOACIDS_NOT_IN_NUCLEOTIDES

set

All letter codes that only represent aminoacids (and not also nucleotides).